yxkH [2019-08-26 09:28:33]

similar to polysaccharide deacetylase

locus: BSU_38800

pI: 7.80

mw: 31.26 kDa

protein length: 279 aa

gene length: 840 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 3,983,187 → 3,984,026

The protein

Protein family

• [SW|polysaccharide deacetylase family] (according to UniProt)

Structure

• [PDB|1HD5] (from B. cereus, 30% identity)

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]
  description: [Pubmed|10746760]

  sigma factors

  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|26577401], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]

Biological materials

Mutant

• MGNA-B742 (yxkH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1741 NBRP B. subtilis, Japan]
• BKE38800 (Δ[gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG, downstream forward: _UP4_TCAATGAAATAAAAAAAGGC
• BKK38800 (Δ[gene|F66D9DFE457E2ADADD72DE7B99CD2FEE35C6462F|yxkH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTCTCCTGCTTTCTG, downstream forward: _UP4_TCAATGAAATAAAAAAAGGC

References

• 10746760,26577401